Part Primate , Part reptilian (subterranean) origins of mankind ?

(I had sent this post twice earlier from my phone , but strangely it did not reach...now sending this again through my MacBook)
Folks , mankind might well have had a part primate - part reptilian (subterranean) origin . One thing is almost certain ,the intelligent reptilians , the last surviving remnants of the dinosaurs , who probably now live in subterranean regions , predate mankind on this planet , by eons .

**You see , even if most dinosaurs on the Earth's surface became extinct 65 million years ago , the possibility for some of them to have survived cannot be totally ruled out . If few of them did survive , they had a full 65 million year headstart over humans to develop further and evolve into more intelligent beings (what we now call reptilians) . Also , having experienced such cataclysms in the past , these last surviving members of the dinosaurs , might have moved into subterranean regions of the Earth :

Homo Reptilis - Eden Saga - english

Homo Reptilis

Xavier Séguin

Like good fairies, many developed species have looked at the cradle of our humanity. Between Elohim, Anunna, Olympians, Titans, Deva, Rama, Asvins, Aesir, Venusians, Sons of the Sun, Quetzalcoatl, Olmecs and Viracocha, it is difficult to know really who conceived us, who brought us up, who taught us and who protected us over the eons.

The Christianity of the good Jesus offers many candidates: the Elohim, the Angels, the Archangels, the Thrones, the Powers, the Archaea, Yahveh, Adonai, the Demons and some other higher creatures, all equally close to us, all equally able to have us, if not created, say procreate.
In the Garden of Eden, the Serpent-devil advises Eve to rebel against God. We see later why this Serpent is not a bad guy. Now who is this God? Theos in Greek, in other words Zeus the Olympian? Yahveh? Adonai? One of the Elohim, Elijah for example? The Catholic Bible does not specify it, indifferently using the word “god” – that is to say Zeus, theos in Greek – to designate a dozen beings who each bears a different name in the original version. Gods, there were many around us on our prime. And not all of them agree, except to protect and grow this humanity.

Genealogy of the good fairies

From the previous humanity only a few traces are left. The Patriarchs are the giant of great power who made up the fourth humanity, or if you prefer the fourth generation in charge of life and mind on this little distant planet.

On the sidelines of the super concentrations of stars in the galactic heart, we are nestled somehow in a lost suburb, where half-pirates zonards terraform the wild planets like ours. They are more or less mandated by the Great Gods of the galactic center, but they act for their own benefit.

This laxity is made possible by the extreme distance we are in. The galactic center is so far from here that one can think oneself alone in the world! Many scientists are convinced of this. Their great knowledge thus dispenses them from thinking? Is intelligence measured by the sum of lessons learned and data accepted? Only the daily exercise of doubt is the guarantee of a right science. The questioning of all the data received and held to be right is the inflexible rule that a scientist must observe.

If the fourth humanity has a name, it is surely that of Enoch. Hebrew חֲנוֹךְ (ḥănōkh), Latin Enoch, Arabic إدريس (Idris) Enoch is a biblical patriarch, son of Yared, father of Methuselah, great-grandfather of Noah (source). All these people are not only individuals, they represent different peoples. The Book of Enoch is a true encyclopedia of the culture and manners of the previous humanity.

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Hénoch — Wikipédia

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In German, conservatory of the language of the origins, HEN = hen, NOCH = still. Or HENd = start, NOCH = again. When we know that this brave Enoch has spent his time leaving this planet, when we know that he accompanied many departures of the Goddess, we still think that rooster HENoch is not a only man, not only a hen, but a whole people. Which would explain why they lend him such a long life …

Noah being the last of the Patriarchs, our humanity, fifth of the name, would have been born after the flood. Certainly, but which one? Deluges, there were several, said the priest of Sais to Solon – if we believe Plato. So ? Is it the deluge of -2500, when a giant comet grazed the Earth? Is it the deluge of -10,500, when the Atlantis-island ship caused a gigantic tsunami on both shores of the Atlantic Ocean? Is it a much older flood?

According to anthropologists, Homo sapiens appeared on this planet more than 250,000 years ago. It was at this time that our very first ancestor was conceived. It is neither Adam nor Eve, these two appeared much later. In this distant age, the Reptilians were the undisputed masters of this planet. They had developed perfect sciences, they possessed innumerable techniques and acquired so much know-how. To satisfy needs they could not answer themselves, their geneticist scientists shaped the first human, giant Lilith.

Who are the Reptilians?

The Reptilians are not extraterrestrials. They are the heirs of this planet and its legitimate owners. A developed fraction of the dinos who have been ruling so long on earth. Their existence is attested by numerous texts written or derived from the oral tradition of the Sumerians, Romans, Greeks, Persians, Thracians, Scythians, Egyptians, Australian Aborigines, Maori, Pascuans, Inuit, Plains Indians, Mayas, Aztecs, Incas, Tongues, Mongols, Chinese, Japanese, Koreans, Berbers, Dogons, Yorubis, Fulani, Zulus, Celts, Vikings, Basques, Andalusians, and all, innumerable, whom I omit.

In spite of this deluge of convergent testimonies, paleo-anthropologists still refuse to admit their existence. We will do without their flickering lights. Who needs them to baptize this intelligent species? Certainly not me. In the name of the Mother, the Father and the Child, I call them Homo Sapiens Reptilis. Why do I say that they are Homo sapiens? Because they created us in their image. And because they have reproduced with us. What makes them Homo Reptilis. Indeed, Sapiens is not enough for these gifted. So Homo potens? Homo supersapiens? In short, you have grasped the idea. These Reptilis crush us in all areas.

Their size, already, is double of ours. Their strength is greater still. Their lifespan makes us ephemeral. This is the name that Zeus gives us. I’m not saying that Zeus is reptilian, but I think it very hard. His name sounds like the hiss of the snake. And then the letter Z does not evoke the snake? And the final S? As for the EU phoneme, in ancient Greek it means good, harmonious, beneficial. Zeus is therefore the good serpent.

For there are bad ones like the Serpent of Genesis. The ugly tempter who drives Eve to disobey God. Hey, but it’s for her good! He only informs her. He gives her one of God’s secrets. But then, will you tell me, if Zeus is a serpent, and if Zeus is God, and if the Serpent is the devil, there are only reptiles around our cradle? You said so. Still, a snake gives the secret of another snake to Eve La Serpente. Did I say La Serpente? But no, it’s her eldest sister Lilith who mates with the Reptilians!

In any case, Eve intends to use this famous secret. The knowledge of good and evil We have it all from birth, thanks to Eve. I do not say because of Eve, but the heart is there. Would not one be happier without this famous secret? The tiger that crunches the vertebrae of zebu or man does not know the harm. He acts strangely, that’s enough for him. The man who slaughters the tiger knows he is doing wrong. It excites him or he does not care, he is always shooting. At worst, he kills. At worst, the tiger kills him. The best ?

Jean-Jacques Rousseau was tempted by this delirium of innocence. He begins to dream of a past blessed for our species, a sweetness of life, a sweetness of manners, a fairness and an honesty that he imagines to be the qualities of primitive peoples. This delirium worthy of Bisounours has been baptized the myth of the good savage. Myth in the Faribole sense. Implied: there is no more good savage than good god. Holy good god!

God and the Serpent are two great figures of the Garden of Eden. The Serpent is not the devil, since it seems to him at home. At my idea, God is his guest. He came from the stars, him. Even before God arrived, the Serpent was already there. Remember the very ancient occupants of this planet. Yes, I want to talk about dinosaurs. They are the first masters of the Earth. They spent tens of millions of years there.

In their big family, he found a dino smarter than the others. He made his way. He dominated all his cousins. And now he is there, in his garden, to baratine the beautiful Eve with whom he probably sleeps. And God too. Humans appeal to terraformers. So we have Homo reptilis and Homo stellaris, the superman who comes from the stars. From the Big Dipper, to be precise. Which of the two created the Man? If you find it, you will know that the other has created the Woman. Created. Not crunched. Though …

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Homo Reptilis - Eden Saga - english

Who conceived us, brought us up, taught us and protected us over the eons?
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I don't believe in such things as "legitimate rulers" and I recognize the reptilian consciousness as extremely limited therefore prone to confusion, coercion, and staggering deception. Besides that this is a very interesting post and I agree that those who have witnessed and suffered under the dark murderous side of the reptile would do well to reconsider what their experience really might mean in light of the totality of existence.

Murugan , now that you bring this up , I was reading up the Rig Vedic story of the giant Serpent/dragon Vritra , who was slain by the chief of the Devas (demi-gods) Indra...

In that context there is a very intriguing statement on how Lord Brahma , upon seeing the surface of the Earth teeming with the hyper-fertile reptiles , asked them to move into the subterranean regions .

That was probably like "clearing the field" for humans to arrive on the Earth's surface !

Besides the Vedic references , nearly every human culture on the planet has ancient stories about ancient reptilians , intelligent & wise reptilians , dragons , good reptilians , evil reptilians , shape-shifting reptilians , subterranean reptilians , aquatic reptilians (mermaids) , human-reptilian hybrids etc. etc. , the list is VERY long .

Then we have entire nations who had creation myths involving reptilians , who consider themselves as descended from reptilians (all Chinese emperors were supposed to be from dragon bloodlines) .

When there was SO much smoke , there had to be a fire somewhere !

Regards

I should add here that in Buddhism , certain sects of Hinduism , parts of Africa and the native American civilisations , some serpent deities are even worshipped .

Regards

Sidhartha and all,

The Mayans in the Yucatan and Guatemala and Guatepeor used to worship nothing less than the Vedic deity Rahu, the serpent of the heavens.

I have some reasoning to believe that this culture stretched all the way down to the Brazil - Paraguay border. But that is a project on the back burner.

Dean

Dean , then you must surely have read or heard about Quetzalcoatl , the feathered , Plumed Serpent , worshipped as a Creator God of the Aztec & Maya civilisations :

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Quetzalcoatl

Quetzalcóatl (pron. Quet-zal-co-at) was one of the most important gods in ancient Mesoamerica. The god known as ...
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Quetzalcoatl

Quetzalcóatl (pron. Quet-zal-co-at) was one of the most important gods in ancient Mesoamerica. The god known as the Plumed Serpent is a mix of bird and rattle snake and his name is a combination of the Nahuatl words for the quetzal - the emerald plumed bird - and coatl or serpent. He was also known as Kukulkán to the Maya, Gucumatz to the Quiché of Guatemala, and Ehecatl to the Huastecs of the Gulf Coast. He was regarded as the god of winds and rain and as the creator of the world and mankind. In Central Mexico from 1200 CE he was also considered the patron god of priests and merchants and considered the god of learning, science, agriculture, crafts and the arts. He also invented the calendar, was identified with Venus, the rising morning star, he was associated with opossums and even discovered corn (maize) with the help of giant red ant that led him to a mountain packed full of grain and seeds.

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Ehecatl

Ehecatl was a Mesoamerican god of air and winds, especially those which brought rains. Regarded as a manifestati...
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Quetzalcóatl was the son of the primordial androgynous god Ometeotl. In Aztec mythology he was the brother of Tezcatlipoca, Huizilopochtli and Xipe Totec. He is the 9th of the 13 Lords of the Day and is often associated with the rain god Tláloc. The god was particularly associated with the sacred site of Cholula, an important place of pilgrimage from 1200 CE and all round Aztec buildings were dedicated to the deity.

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Xipe Totec

Xipe Totec (pron. Xi-pe To-tec) or ‘Flayed One’ in Nahuatl, was a major god in ancient Mesoamerican culture and...
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Tezcatlipoca

Tezcatlipoca (pron. Tez-ca-tli-po-ca) or ‘Smoking Mirror’ in Nahuatl was one of the most important gods in Postc...
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In Central Mexico the god was strongly associated with the wind, in particular as a bringer of rain clouds.
A Creator God

In the Late Postclassical period (from 1200 CE) in Central Mexico the god came to be strongly associated with the wind (in particular as a bringer of rain clouds) and as the creator god Ehecatl-Quetzalcóatl. In Postclassical Nahua tradition Quetzalcóatl is also the creator of the cosmos along with either his brother Tezcatlipoca or Huitzilopochtli and is one of the four sons of Tonacateuctli and Tonacacihuatl, the original creator gods. After waiting for 600 years this aged couple instructed Quetzalcóatl to create the world. In some versions of the myth Quetzalcóatl and Tezcatlipoca repeatedly fight each other and as a consequence the four ages are created and destroyed with each successive battle between the two gods.

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Huitzilopochtli

Huitzilopochtli (pron. Huit-zi-lo-pocht-li) or ‘Hummingbird of the South’ or ‘Blue Hummingbird on the Left’ was ...
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In an alternative version of creation Quetzalcóatl and Tezcatlipoca are more cooperative and together they create the sun, the first man and woman, fire and the rain gods. The pair of gods had created the earth and the sky when they transformed themselves into huge snakes and ripped in two the female reptilian monster known as Tlaltcuhtli (or Cipactli), one part becoming the earth and the other the sky. Trees, plants and flowers sprang from the dead creature’s hair and skin whilst springs and caves were made from her eyes and nose and the valleys and mountains came from her mouth. In some versions of the story the divine spirit of Cipactli was understandably upset to have lost her physical body in such a brutal attack and the only way to appease her was through the sacrifice of blood and hearts and so one of the more unpalatable practices of ancient Mesoamerican culture, the ritual of human sacrifice, was justified.

In the myth of mankind’s creation Quetzalcóatl descends into Mictlán - the underworld - where he is sent to remove some bones. However, Mictlanteuctli and Mictlancihuatl, the ruling gods of the underworld, agree to give the bones only if Quetzalcóatl can blow a conch-shell horn that has no holes in it. The clever Quetzalcóatl gets around the problem by having worms drill holes in the conch and putting bees inside to make it sound. Quetzalcóatl also pretends to leave the underworld without the bones, declaring his intention to leave them where they are whilst in actual fact he steals them from under the nose of Mictlanteuctli. The god is outraged at the deceit and makes a pit to entrap the trickster. Quetzalcóatl does indeed fall into the pit and in so doing scatters the ill-gotten bones so that the male and female parts are mixed. Gathering up the bones, Quetzalcóatl escapes the pit and gives them to the great snake goddess Cihuacóatl to magically fashion them into people by mixing them with corn and some of Quetzalcóatl’s blood.
Aztec Double-Headed Serpent (Detail)
Representations In Art

The earliest surviving representation of Quetzalcóatl is from the Olmec civilization with a carving at La Venta of a beaked snake with a feather crest flanked by two quetzal birds and a sky band. The earliest representation in Mexico is at Teotihuacán where there are 3rd century CE representations of feathered snakes and where a six-tiered pyramid was built in the god’s honour. These representations of the god and those at the later site of Cacaxtla include the god with rain and water suggesting a strong association with that element. The god was often represented in architectural sculptural decoration and he appears at other sites such as Xochicalco but rarely with any human form before the Late Postclassical period, an exception is a carved palma from Veracruz.

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Olmec Civilization

The mysterious Olmec civilization, located in ancient Mexico, prospered in Pre-Classical (Formative) Mesoamerica...
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From 1200 CE Quetzalcóatl is often represented in human form and usually wears shell jewellery and a conical hat (copilli). He may also have a hat-band holding sacrificial implements, a flower, a fan of black and yellow feathers and ear-rings of jade circles or spiral shells (epcololli). The god also often wears the wind jewel (Ehecailacozcatl) which is a cross section of a conch whorl worn as a pectoral. As Ehecatl-Quetzalcóatl he is often black, wears a red mask like a duck’s beak and has long canine teeth. As god of the cardinal directions Quetzalcóatl was also associated with the colours black (north), red (east), blue (south) and white (west).

Following the Spanish Conquest the already complex myths surrounding Quetzalcóatl became even more twisted, a situation not helped by the confusion of the god’s history with that of the legendary first ruler of the Toltecs at Tollan, Ce Acatl Topiltzin Quetzalcóactl, who took on the name of the god as one of his titles. Even today the legend and symbolism of Quetzalcóatl lives on and he has become a beacon of Mexican national pride and a powerful symbol of indigenous tradition.

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Aztec Double-Headed Serpent (Detail)

A detail of the celebrated Aztec double-headed serpent. It is made from wood covered in turquoise mosaic, spondy...
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deandddd wrote:

Sidhartha and all,

The Mayans in the Yucatan and Guatemala and Guatepeor used to worship nothing less than the Vedic deity Rahu, the serpent of the heavens.
I have some reasoning to believe that this culture stretched all the way down to the Brazil - Paraguay border. But that is a project on the back burner.
Dean #yiv0126382490 #yiv0126382490 -- #yiv0126382490ygrp-mkp {border:1px solid #d8d8d8;font-family:Arial;margin:10px 0;padding:0 10px;}#yiv0126382490 #yiv0126382490ygrp-mkp hr {border:1px solid #d8d8d8;}#yiv0126382490 #yiv0126382490ygrp-mkp #yiv0126382490hd {color:#628c2a;font-size:85%;font-weight:700;line-height:122%;margin:10px 0;}#yiv0126382490 #yiv0126382490ygrp-mkp #yiv0126382490ads {margin-bottom:10px;}#yiv0126382490 #yiv0126382490ygrp-mkp .yiv0126382490ad {padding:0 0;}#yiv0126382490 #yiv0126382490ygrp-mkp .yiv0126382490ad p {margin:0;}#yiv0126382490 #yiv0126382490ygrp-mkp .yiv0126382490ad a {color:#0000ff;text-decoration:none;}#yiv0126382490 #yiv0126382490ygrp-sponsor #yiv0126382490ygrp-lc {font-family:Arial;}#yiv0126382490 #yiv0126382490ygrp-sponsor #yiv0126382490ygrp-lc #yiv0126382490hd {margin:10px 0px;font-weight:700;font-size:78%;line-height:122%;}#yiv0126382490 #yiv0126382490ygrp-sponsor #yiv0126382490ygrp-lc .yiv0126382490ad {margin-bottom:10px;padding:0 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Sidhartha,

I had seen the name before, in Raymond Bernard's The Hollow Earth. I hadn't identified him with Kukulkan, though. It is good to know. I have seen a couple of the later Kukulkan temples in The Yucatan, with the Venus temple alongside.

Surely he is the Vedic serpent deity Rahu. You might remember that Venus is the Daitya Guru, the guru of the demons and the reptile bunch.

My understanding is that the Mayan's in the Yucatan spoke Tamil/Dravidian. And the Dravidians had a presence in Baluchistan, northern Africa, Andalusia in Spain, and in Camaroon.

I do believe that the Aryans migrated from the North and crashed the party.

Dean

Dean , the real point of interest in this topic is the unknown "X" factor in the human genome that is NOT of Primate origin . Ever since the sequencing of the human genome was completed , it has become apparent that humans are a hybrid species .
What is not clear is hybrid between Primate and what (reptilians perhaps) ?? That "missing link" is being researched by anthropologists for last 100 years , without result . Probably that "X factor" of the human genome , they are looking for is either inside the Earth or off the Earth , but NOT on the Earth's surface for sure !

Primates such as the Chimpanzee have 48 chromosomes , 24 pairs . In the human genome there are only 46 chromosomes i.e. 23 pairs and this is not a trivial difference , folks . However , the intriguing aspect actually is that the 23rd pair appears like a fusion of 2 chromosomes - it gets weirder still , because that fusion looks unnatural , almost as though it has been "cut and pasted" .

**Then again , certain characteristics of humans such as Rh -ve blood type or the Fox P2 gene , which enables humans to communicate in spoken/written languages , have unknown/unexplained origins , not really found in primates or any other species on Earth .

The crux of the matter is that , if humans are a hybrid species of Primates with something unknown , that hybridisation did NOT occur in nature - it was achieved artificially , almost as if by an ancient geneticist in a lab (God /ET/Reptilian ?) , who knew how to blend the genomes even of incompatible species , such as Primates and reptilians for example .

Regards

deandddd wrote:

Sidhartha,

I had seen the name before, in Raymond Bernard's The Hollow Earth. I hadn't identified him with Kukulkan, though. It is good to know. I have seen a couple of the later Kukulkan temples in The Yucatan, with the Venus temple alongside.
Surely he is the Vedic serpent deity Rahu. You might remember that Venus is the Daitya Guru, the guru of the demons and the reptile bunch.
My understanding is that the Mayan's in the Yucatan spoke Tamil/Dravidian. And the Dravidians had a presence in Baluchistan, northern Africa, Andalusia in Spain, and in Camaroon.
I do believe that the Aryans migrated from the North and crashed the party.
Dean #yiv6134795681 #yiv6134795681 -- #yiv6134795681ygrp-mkp {border:1px solid #d8d8d8;font-family:Arial;margin:10px 0;padding:0 10px;}#yiv6134795681 #yiv6134795681ygrp-mkp hr {border:1px solid #d8d8d8;}#yiv6134795681 #yiv6134795681ygrp-mkp #yiv6134795681hd {color:#628c2a;font-size:85%;font-weight:700;line-height:122%;margin:10px 0;}#yiv6134795681 #yiv6134795681ygrp-mkp #yiv6134795681ads {margin-bottom:10px;}#yiv6134795681 #yiv6134795681ygrp-mkp .yiv6134795681ad {padding:0 0;}#yiv6134795681 #yiv6134795681ygrp-mkp .yiv6134795681ad p {margin:0;}#yiv6134795681 #yiv6134795681ygrp-mkp .yiv6134795681ad a {color:#0000ff;text-decoration:none;}#yiv6134795681 #yiv6134795681ygrp-sponsor #yiv6134795681ygrp-lc {font-family:Arial;}#yiv6134795681 #yiv6134795681ygrp-sponsor #yiv6134795681ygrp-lc #yiv6134795681hd {margin:10px 0px;font-weight:700;font-size:78%;line-height:122%;}#yiv6134795681 #yiv6134795681ygrp-sponsor #yiv6134795681ygrp-lc .yiv6134795681ad {margin-bottom:10px;padding:0 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Sidhartha,

What a nice explnation!

The Puranas tell of so much contact between humans and devas/celestials, and portrays the devas in a fostering and shepherding role, that I imagine that the devas were our geneticists.

Dean

Dean , the "genesis" event might actually have been an ancient geneticist (God/ET/Reptilian) creating humans in a lab by blending Primate DNA with DNA of some other species .

Humans have some very striking anatomical & behavioural differences from our primate cousins which cannot be explained easily :

  1. A long slender neck , unlike say chimps whose head rests almost directly on their shoulders

  2. A descended Adam's Apple (voice box) in our throat , a feature missing from primates .Humans have a distinct chin that apparently has no clear function and mis missing in chimps

  3. Relatively small difference in body size between males and females (in chimps there is a large difference in body size of males & females)

  4. Human skin is thin & of a smooth texture , unlike chimps who have thick , rough & ridged texture of skin beneath their fur

  5. Chimps and other primates hate water and do NOT like to swim or dive underwater . They only visit waterholes for drinking water

  6. Humans on the other hand , have a tremendous affinity for water - human infants can even be born underwater , chimp infants wouldn't survive this . There is even an "Aquatic ape theory" to explain this strange characteristic of humans

  7. Human skin has sweat glands - a very unusual feature for the skin of a land animal , whereas most other land mammals , including other primates , cool off by hanging out their tounges and panting .

  8. Humans are prone to diseases such as diabetes , heart disease , hypertension and obesity which is completely missing in other primates

  9. Humans are vulnerable to a huge number of allergies , that do not seem to affect other primates

  10. Humans are not at ease in the wilderness , finding it difficult to survive alone when left in the wild , whereas other primates are extremely well adapted to the Earth's natural environment .

Also take a look at what I found on the Smithsonian.com website :
https://www.smithsonianmag.com/science-nature/artificial-intelligence-study-human-genome-finds-unknown-human-ancestor-species-180971436/

Artificial Intelligence Study of Human Genome Finds Unknown Human Ancestor

**The machine’s conclusion? An ancestor species is present in our lineage that we have yet to identify.

The genetic footprint of a “ghost population” may match that of a Neanderthal and Denisovan hybrid fossil found in Siberia

image: https://thumbs-prod.si-cdn.com/KO3luG-uBy5kPKCU6drTLVXRrMw=/800x600/filters:no_upscale():focal(1000x800:1001x801)/https://public-media.si-cdn.com/filer/59/e2/59e216c7-6f22-4969-b408-063d0e73821d/ho_skull_casts_front.jpg
The complicated tree of human evolution could include extinct species that have not yet been discovered. (Smithsonian's Human Origins Program) By Brian Handwerk

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Articles by Brian Handwerk | Smithsonian

Brian Handwerk is a freelance writer based in Amherst, New Hampshire.
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smithsonian.com
February 8, 2019 17.8K24805022.3K
Can the minds of machines teach us something new about what it means to be human? When it comes to the intricate story of our species’ complex origins and evolution, it appears that they can.

A recent study used machine learning technology to analyze eight leading models of human origins and evolution, and the program identified evidence in the human genome of a “ghost population” of human ancestors. The analysis suggests that a previously unknown and long-extinct group of hominins interbred with Homo sapiens in Asia and Oceania somewhere along the long, winding road of human evolutionary history, leaving behind only fragmented traces in modern human DNA.

The study, published in Nature Communications, is one of the first examples of how machine learning can help reveal clues to our own origins. By poring through vast amounts of genomic data left behind in fossilized bones and comparing it with DNA in modern humans, scientists can begin to fill in some of the gaps of our species’ evolutionary history.

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Approximate Bayesian computation with deep learning supports a third arc...

Introgression of Neanderthals and Denisovans left genomic signals in anatomically modern human after Out-of-Afri...
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In this case, the results seem to match paleoanthropology theories that were developed from studying human ancestor fossils found in the ground. The new data suggest that the mysterious hominin was likely descended from an admixture of Neanderthals and Denisovans (who were only identified as a unique species on the human family tree in 2010). Such a species in our evolutionary past would look a lot like the fossil of a 90,000-year-old teenage girl from Siberia's Denisova cave. Her remains were described last summer as the only known example of a first-generation hybrid between the two species, with a Neanderthal mother and a Denisovan father.

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Genetic history of an archaic hominin group from Denisova Cave in Siberia

Using DNA from a finger bone, the genome of an archaic hominin from southern Siberia has been sequenced to about...
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Ancient Girl’s Parents Were Two Different Human Species

Photograph by Robert Clark, National Geographic

Born 90,000 years ago, the child is the first direct evidence of interbreeding among Neanderthals and their cous...
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“It's exactly the kind of individual we expect to find at the origin of this population, however this should not be just a single individual but a whole population,” says study co-author Jaume Bertranpetit, an evolutionary biologist at Barcelona's Pompeu Fabra University.

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Evolutionary Systems Biology (UPF)

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image: https://thumbs-prod.si-cdn.com/u5W3aF5VxsMffA0rfs-x4LUomgY=/fit-in/1072x0/filters:focal(721x537:722x538)/https://public-media.si-cdn.com/filer/56/ba/56ba4950-fe4c-4987-b668-e13dc77da457/google_earth.jpg
The ability of early humans to adjust to changing conditions ultimately enabled the earliest species of Homo to vary, survive and begin spreading from Africa to Eurasia 1.85 million years ago. (Image courtesy of Antón, Potts and Aiello (2014), Science 345(6192))
Previous human genome studies have revealed that after modern humans left Africa, perhaps 180,000 years ago, they subsequently interbred with species like Neanderthals and Denisovans, who coexisted with early modern humans before going extinct. But redrawing our family tree to include these divergent branches has been difficult. Evidence for “ghost” species can be sparse, and many competing theories exist to explain when, where, and how often Homo sapiens might have interbred with other species.

Traces of these ancient interspecies liaisons, called introgressions, can be identified as places of divergence in the human genome. Scientists observe more separation between two chromosomes than you'd expect if both of the chromosomes came from the same human species. When scientists sequenced the Neanderthal genome in 2010, they realized that some of these divergences represented fractions of our genome that came from Neanderthals. Studies have also revealed that some living humans can trace as much as 5 percent of their ancestry to Denisovans.

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The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-...

Sankararaman et al. present a map of Denisovan and Neanderthal ancestry in 120 diverse populations and show that...
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Complete Neanderthal Genome Sequenced

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Neanderthals Went Extinct 30,000 Years Ago, But Their DNA Is Still in th...

Rachel Nuwer

Some of the Neanderthal genes made important contributions while others made us more susceptible to disease
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“So, we thought we'd try to find these places of high divergence in the genome, see which are Neanderthal and which are Denisovan, and then see whether these explain the whole picture,” Bertranpetit says. “As it happens, if you subtract the Neanderthal and Denisovan parts, there is still something in the genome that is highly divergent.”

Identifying and analyzing the many divergent places throughout the genome, and computing the countless genetic combinations that could have produced them, is too big a job for humans to tackle on their own—but it's a task that may be tailor made for deep learning algorithms.

Deep learning is a type of artificial intelligence in which algorithms are designed to work as an artificial neural network, or a program that can process information the same way a mammalian brain would. These machine learning systems can detect patterns and account for previous information to “learn,” allowing them to perform new tasks or look for new information after analyzing enormous amounts of data. (A common example is Google DeepMind’s AlphaZero, which can teach itself to master board games.)

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Google's New AI Is a Master of Games, but How Does It Compare to the Hum...

Katherine J. Wu

After building AlphaGo to beat the world's best Go players, Google DeepMind built AlphaZero to take on the world...
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“Deep learning is fitting a more complicated shaped thing to a set of points in a bigger space,” says Joshua Schraiber, an evolutionary genomics expert at Temple University. “Instead of fitting a line between Y and X, you're fitting some squiggly thing to a set of points in much bigger, thousand-dimensional space. Deep learning says, ‘I don't know what squiggly shape should fit to these points, but let's see what happens.’”

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Temple University PSM Bioinformatics :: Joshua Schraiber

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In this case, machines were set to work analyzing the human genome and predicting human demographics by simulating how our DNA might have evolved over many thousands of possible scenarios of ancient evolution. The program accounted for the structure and evolution of DNA as well as models of human migration and interbreeding to try to fit some of the pieces together in an incredibly complex puzzle.

The researchers trained the computer to analyze eight different models of the most plausible theories of early human evolution across Eurasia. The models came from previous studies that attempted to come up with a scenario that would result in the current picture of the human genome, including its known Neanderthal and Denisovan components.

“There could be other models, of course, but these models are the ones that other people have been proposing in the scientific literature,” Bertranpetit says. Each model begins with the accepted out-of-Africa event, then features a different set of the most likely splits between human lineages, including various interbreedings with both known species and possible “ghost” species.

image: https://thumbs-prod.si-cdn.com/t6fjc0wpKx1LD1nB_70tnuBX8FE=/fit-in/1072x0/https://public-media.si-cdn.com/filer/ac/36/ac36f68c-7591-410a-a241-24b07b513ae9/updated_ho_family_tree.jpg
Humans, or Homo sapiens, are descended from a complex tree of upright walking ancestors, including species from the genera Ardipithecus, Australopithecus and Paranthropus. (Smithsonian's Human Origins Program)
“With each of these eight models, we calculate over weeks of computations how well they are able to reach the actual, present genetic composition of humans,” Bertranpetit says. “Every time we do a simulation, it's a simulation of a possible path of human evolution, and we have run those simulations thousands of times, and the deep learning algorithms are able to recognize which of the models best suit the data.”

The machine’s conclusion? An ancestor species is present in our lineage that we have yet to identify. “By far, the only models we tested that really are backed by the data are the ones having this ghost population introgression,” Bertranpetit says.

The intriguing study and others like it may help redraw the map of how humans migrated and evolved though what appears to be an increasingly complicated ancient world in Eurasia and Oceania.

“It’s certainly interesting and consistent with the emerging picture of a complex reticulated phylogeny in human evolution,” Iain Mathieson, a University of Pennsylvania population geneticist, says via email. “I’m not even sure it makes sense to talk about 'introgression events' when that seems to be the norm.” In fact, because only eight models were tested and many others could be possible, Mathieson adds that the new findings are “certainly a plausible scenario, but the reality is likely even more complex.”

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Mathieson Lab | Mathieson Lab | Perelman School of Medicine at the Unive...

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As new fossil discoveries are made in the field, updated models can now be tested against the human genome using these types of programs. Schraiber says the power of deep learning for studying human origins lies precisely in its capability to analyze complex models.

“If you want to do an extremely detailed model because you're an anthropologist, and you want to know if this introgression happened 80,000 years ago or 40,000 years ago, that's the power of a deep learning approach like this.”

Complex as they are, the interbreedings of ancient Eurasia are still only one part of our human story. Bertranpetit believes that future advances in deep learning can help uncover other new chapters.

“This kind of method of analysis is going to have all kinds of new results,” he says. “I am sure that people working in Africa will find extinct groups that are not recognized yet. No doubt Africa is going to show us surprising things in the future.”

Read more: https://www.smithsonianmag.com/science-nature/artificial-intelligence-study-human-genome-finds-unknown-human-ancestor-species-180971436/#xmDh4vJTh2IZDcUJ.99
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deandddd wrote:

Sidhartha,

What a nice explnation!
The Puranas tell of so much contact between humans and devas/celestials, and portrays the devas in a fostering and shepherding role, that I imagine that the devas were our geneticists.
Dean #yiv8439866253 #yiv8439866253 -- #yiv8439866253ygrp-mkp {border:1px solid #d8d8d8;font-family:Arial;margin:10px 0;padding:0 10px;}#yiv8439866253 #yiv8439866253ygrp-mkp hr {border:1px solid #d8d8d8;}#yiv8439866253 #yiv8439866253ygrp-mkp #yiv8439866253hd {color:#628c2a;font-size:85%;font-weight:700;line-height:122%;margin:10px 0;}#yiv8439866253 #yiv8439866253ygrp-mkp #yiv8439866253ads {margin-bottom:10px;}#yiv8439866253 #yiv8439866253ygrp-mkp .yiv8439866253ad {padding:0 0;}#yiv8439866253 #yiv8439866253ygrp-mkp .yiv8439866253ad p {margin:0;}#yiv8439866253 #yiv8439866253ygrp-mkp .yiv8439866253ad a {color:#0000ff;text-decoration:none;}#yiv8439866253 #yiv8439866253ygrp-sponsor #yiv8439866253ygrp-lc {font-family:Arial;}#yiv8439866253 #yiv8439866253ygrp-sponsor #yiv8439866253ygrp-lc #yiv8439866253hd {margin:10px 0px;font-weight:700;font-size:78%;line-height:122%;}#yiv8439866253 #yiv8439866253ygrp-sponsor #yiv8439866253ygrp-lc .yiv8439866253ad {margin-bottom:10px;padding:0 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Hi, Primates are 2% different to Humans, on the other hand, Dolphins are only 0.2% different, to Us. It was long thought that the Primates were our closest relative, and to this day the authorities don't want It widely known about how close the Link is between Us and the Dolphins.

[Human Species Skulls] The complicated tree of human evolution could include extinct species that have not yet been discovered. (Smithsonian's Human Origins Program)
By Brian Handwerk https://www.smithsonianmag.com/author/brian-handwerk/

https://www.smithsonianmag.com/author/brian-handwerk/
Articles by Brian Handwerk | Smithsonian

Brian Handwerk is a freelance writer based in Amherst, New Hampshire.

February 8, 2019
17.8K24805022.3K

Can the minds of machines teach us something new about what it means to be human? When it comes to the intricate story of our species’ complex origins and evolution, it appears that they can.

A recent study used machine learning technology to analyze eight leading models of human origins and evolution, and the program identified evidence in the human genome of a “ghost population” of human ancestors. The analysis suggests that a previously unknown and long-extinct group of hominins interbred with Homo sapiens in Asia and Oceania somewhere along the long, winding road of human evolutionary history, leaving behind only fragmented traces in modern human DNA.

The study, published in Nature Communicationshttps://www.nature.com/articles/s41467-018-08089-7, is one of the first examples of how machine learning can help reveal clues to our own origins. By poring through vast amounts of genomic data left behind in fossilized bones and comparing it with DNA in modern humans, scientists can begin to fill in some of the gaps of our species’ evolutionary history.

https://www.nature.com/articles/s41467-018-08089-7
Approximate Bayesian computation with deep learning supports a third arc...

Introgression of Neanderthals and Denisovans left genomic signals in anatomically modern human after Out-of-Afri...

In this case, the results seem to match paleoanthropology theories that were developed from studying human ancestor fossils found in the ground. The new data suggest that the mysterious hominin was likely descended from an admixture of Neanderthals and Denisovans (who were only identified as a unique species on the human family tree in 2010https://www.nature.com/articles/nature09710). Such a species in our evolutionary past would look a lot like the fossil of a 90,000-year-old teenage girl from Siberia's Denisova cave. Her remains were described last summer as the only known example of a first-generation hybrid between the two specieshttps://www.nationalgeographic.com/science/2018/08/news-denisovan-neanderthal-hominin-hybrid-ancient-human/, with a Neanderthal mother and a Denisovan father.

https://www.nature.com/articles/nature09710
Genetic history of an archaic hominin group from Denisova Cave in Siberia

Using DNA from a finger bone, the genome of an archaic hominin from southern Siberia has been sequenced to about...

https://www.nationalgeographic.com/science/2018/08/news-denisovan-neanderthal-hominin-hybrid-ancient-human/
Ancient Girl’s Parents Were Two Different Human Species

Photograph by Robert Clark, National Geographic

Born 90,000 years ago, the child is the first direct evidence of interbreeding among Neanderthals and their cous...

“It's exactly the kind of individual we expect to find at the origin of this population, however this should not be just a single individual but a whole population,” says study co-author Jaume Bertranpetithttps://www.upf.edu/web/evolutionary-systems-biology, an evolutionary biologist at Barcelona's Pompeu Fabra University.

https://www.upf.edu/web/evolutionary-systems-biology
Evolutionary Systems Biology (UPF)

image: https://thumbs-prod.si-cdn.com/u5W3aF5VxsMffA0rfs-x4LUomgY=/fit-in/1072x0/filters:focal(721x537:722x538)/https://public-media.si-cdn.com/filer/56/ba/56ba4950-fe4c-4987-b668-e13dc77da457/google_earth.jpg

[Spread of Genus Homo] The ability of early humans to adjust to changing conditions ultimately enabled the earliest species of Homo to vary, survive and begin spreading from Africa to Eurasia 1.85 million years ago. (Image courtesy of Antón, Potts and Aiello (2014), Science 345(6192))

Previous human genome studies have revealed that after modern humans left Africa, perhaps 180,000 years agohttp://science.sciencemag.org/content/359/6374/389, they subsequently interbred with species like Neanderthals and Denisovans, who coexisted with early modern humans before going extinct. But redrawing our family tree to include these divergent branches has been difficult. Evidence for “ghost” species can be sparse, and many competing theories exist to explain when, where, and how often Homo sapiens might have interbred with other species.

Traces of these ancient interspecies liaisons, called introgressions, can be identified as places of divergence in the human genome. Scientists observe more separation between two chromosomes than you'd expect if both of the chromosomes came from the same human species. When scientists sequenced the Neanderthal genomehttps://www.genome.gov/27539119/2010-release-complete-neanderthal-genome-sequenced/ in 2010, they realized that some of these divergences represented fractions of our genome that came from Neanderthalshttps://www.smithsonianmag.com/smart-news/neanderthals-went-extinct-30000-years-ago-their-dna-lives-us-180949561/. Studies have also revealed that some living humans can trace as much as 5 percent of their ancestry to Denisovanshttps://www.cell.com/current-biology/fulltext/S0960-9822(16)30247-0?_returnURL=https://linkinghub.elsevier.com/retrieve/pii/S0960982216302470?showall=true.

https://www.cell.com/current-biology/fulltext/S0960-9822(16)30247-0?_returnURL=https://linkinghub.elsevier.com/retrieve/pii/S0960982216302470?showall=true
The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-...

Sankararaman et al. present a map of Denisovan and Neanderthal ancestry in 120 diverse populations and show that...

https://www.genome.gov/27539119/2010-release-complete-neanderthal-genome-sequenced/
Complete Neanderthal Genome Sequenced

https://www.smithsonianmag.com/smart-news/neanderthals-went-extinct-30000-years-ago-their-dna-lives-us-180949561/
Neanderthals Went Extinct 30,000 Years Ago, But Their DNA Is Still in th...

Rachel Nuwer

Some of the Neanderthal genes made important contributions while others made us more susceptible to disease

“So, we thought we'd try to find these places of high divergence in the genome, see which are Neanderthal and which are Denisovan, and then see whether these explain the whole picture,” Bertranpetit says. “As it happens, if you subtract the Neanderthal and Denisovan parts, there is still something in the genome that is highly divergent.”

Identifying and analyzing the many divergent places throughout the genome, and computing the countless genetic combinations that could have produced them, is too big a job for humans to tackle on their own—but it's a task that may be tailor made for deep learning algorithms.

Deep learning is a type of artificial intelligence in which algorithms are designed to work as an artificial neural network, or a program that can process information the same way a mammalian brain would. These machine learning systems can detect patterns and account for previous information to “learn,” allowing them to perform new tasks or look for new information after analyzing enormous amounts of data. (A common example is Google DeepMind’s AlphaZerohttps://www.smithsonianmag.com/innovation/google-ai-deepminds-alphazero-games-chess-and-go-180970981/, which can teach itself to master board games.)

https://www.smithsonianmag.com/innovation/google-ai-deepminds-alphazero-games-chess-and-go-180970981/
Google's New AI Is a Master of Games, but How Does It Compare to the Hum...

Katherine J. Wu

After building AlphaGo to beat the world's best Go players, Google DeepMind built AlphaZero to take on the world...

“Deep learning is fitting a more complicated shaped thing to a set of points in a bigger space,” says Joshua Schraiber, an evolutionary genomics expert at Temple Universityhttps://bioinformatics.cst.temple.edu/people/person/b45ed0d98dd00be05ddad360085641d9. “Instead of fitting a line between Y and X, you're fitting some squiggly thing to a set of points in much bigger, thousand-dimensional space. Deep learning says, ‘I don't know what squiggly shape should fit to these points, but let's see what happens.’”

https://bioinformatics.cst.temple.edu/people/person/b45ed0d98dd00be05ddad360085641d9
Temple University PSM Bioinformatics :: Joshua Schraiber

In this case, machines were set to work analyzing the human genome and predicting human demographics by simulating how our DNA might have evolved over many thousands of possible scenarios of ancient evolution. The program accounted for the structure and evolution of DNA as well as models of human migration and interbreeding to try to fit some of the pieces together in an incredibly complex puzzle.

The researchers trained the computer to analyze eight different models of the most plausible theories of early human evolution across Eurasia. The models came from previous studies that attempted to come up with a scenario that would result in the current picture of the human genome, including its known Neanderthal and Denisovan components.

“There could be other models, of course, but these models are the ones that other people have been proposing in the scientific literature,” Bertranpetit says. Each model begins with the accepted out-of-Africa event, then features a different set of the most likely splits between human lineages, including various interbreedings with both known species and possible “ghost” species.

image: https://thumbs-prod.si-cdn.com/t6fjc0wpKx1LD1nB_70tnuBX8FE=/fit-in/1072x0/https://public-media.si-cdn.com/filer/ac/36/ac36f68c-7591-410a-a241-24b07b513ae9/updated_ho_family_tree.jpg

[Human Family Tree] Humans, or Homo sapiens, are descended from a complex tree of upright walking ancestors, including species from the genera Ardipithecus, Australopithecus and Paranthropus. (Smithsonian's Human Origins Program)

“With each of these eight models, we calculate over weeks of computations how well they are able to reach the actual, present genetic composition of humans,” Bertranpetit says. “Every time we do a simulation, it's a simulation of a possible path of human evolution, and we have run those simulations thousands of times, and the deep learning algorithms are able to recognize which of the models best suit the data.”

The machine’s conclusion? An ancestor species is present in our lineage that we have yet to identify. “By far, the only models we tested that really are backed by the data are the ones having this ghost population introgression,” Bertranpetit says.

The intriguing study and others like it may help redraw the map of how humans migrated and evolved though what appears to be an increasingly complicated ancient world in Eurasia and Oceania.

“It’s certainly interesting and consistent with the emerging picture of a complex reticulated phylogeny in human evolution,” Iain Mathieson, a https://www.med.upenn.edu/mathieson-lab/ University of Pennsylvaniahttps://www.med.upenn.edu/mathieson-lab/ population geneticist,https://www.med.upenn..edu/mathieson-lab/ says via email. “I’m not even sure it makes sense to talk about 'introgression events' when that seems to be the norm.” In fact, because only eight models were tested and many others could be possible, Mathieson adds that the new findings are “certainly a plausible scenario, but the reality is likely even more complex.”

https://www.med.upenn.edu/mathieson-lab/
Mathieson Lab | Mathieson Lab | Perelman School of Medicine at the Unive...

Site Description Goes Here...

As new fossil discoveries are made in the field, updated models can now be tested against the human genome using these types of programs. Schraiber says the power of deep learning for studying human origins lies precisely in its capability to analyze complex models.

“If you want to do an extremely detailed model because you're an anthropologist, and you want to know if this introgression happened 80,000 years ago or 40,000 years ago, that's the power of a deep learning approach like this.”

Complex as they are, the interbreedings of ancient Eurasia are still only one part of our human story. Bertranpetit believes that future advances in deep learning can help uncover other new chapters.

“This kind of method of analysis is going to have all kinds of new results,” he says. “I am sure that people working in Africa will find extinct groups that are not recognized yet. No doubt Africa is going to show us surprising things in the future.”

Read more: https://www.smithsonianmag.com/science-nature/artificial-intelligence-study-human-genome-finds-unknown-human-ancestor-species-180971436/#xmDh4vJTh2IZDcUJ.99
Give the gift of Smithsonian magazine for only $12! http://bit.ly/1cGUiGv
Follow us: @SmithsonianMag on Twitter

Brenda,
Amazing information, nice post.
Dean

Humans have some very striking anatomical & behavioural differences from our primate cousinswhich cannot be explained easily :

  1. A long slender neck , unlike say chimps whose head rests almost directly on their shoulders

  2. A descended Adam's Apple (voice box) in our throat , a feature missing from primates .Humans have a distinct chin that apparently has no clear function and mis missing in chimps

  3. Relatively small difference in body size between males and females (in chimps there is a large difference in body size of males & females)

  4. Human skin is thin & of a smooth texture , unlike chimps who have thick , rough & ridged texture of skin beneath their fur

  5. Chimps and other primates hate water and do NOT like to swim or dive underwater . They only visit waterholes for drinking water

  6. Humans on the other hand , have a tremendous affinity for water - human infants can even be born underwater , chimp infants wouldn't survive this . There is even an "Aquatic ape theory" to explain this strange characteristic of humans

  7. Human skin has sweat glands - a very unusual feature for the skin of a land animal , whereas most other land mammals , including other primates , cool off by hanging out their tounges and panting .

  8. Humans are prone to diseases such as diabetes , heart disease , hypertension and obesity which is completely missing in other primates

  9. Humans are vulnerable to a huge number of allergies , that do not seem to affect other primates

  10. Humans are not at ease in the wilderness , finding it difficult to survive alone when left in the wild , whereas other primates are extremely well adapted to the Earth's natural environment .

Also take a look at what I found on the Smithsonian.com website :
https://www.smithsonianmag.com/science-nature/artificial-intelligence-study-human-genome-finds-unknown-human-ancestor-species-180971436/

Artificial Intelligence Study of Human Genome FindsUnknown Human Ancestor

**The machine’s conclusion? An ancestor species is present in our lineage that we have yet to identify.

The genetic footprint of a “ghost population” may match that of a Neanderthal and Denisovan hybrid fossil found in Siberia

image: https://thumbs-prod.si-cdn.com/KO3luG-uBy5kPKCU6drTLVXRrMw=/800x600/filters:no_upscale():focal(1000x800:1001x801)/https://public-media.si-cdn.com/filer/59/e2/59e216c7-6f22-4969-b408-063d0e73821d/ho_skull_casts_front.jpg
The complicated tree of human evolution could include extinct species that have not yet been discovered.(Smithsonian's Human Origins Program)By Brian Handwerk

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Articles by Brian Handwerk | Smithsonian

Brian Handwerk is a freelance writer based in Amherst, New Hampshire.
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February 8, 2019 17.8K24805022.3K
Can the minds of machines teach us something new about what it means to be human? When it comes to the intricate story of our species’ complex origins and evolution, it appears that they can.

A recent study used machine learning technology to analyze eight leading models of human origins and evolution, and the program identified evidence in the human genome of a “ghost population” of human ancestors. The analysis suggests that a previously unknown and long-extinct group of hominins interbred with Homo sapiens in Asia and Oceania somewhere along the long, winding road of human evolutionary history, leaving behind only fragmented traces in modern human DNA.

The study, published in Nature Communications, is one of the first examples of how machine learning can help reveal clues to our own origins. By poring through vast amounts of genomic data left behind in fossilized bones and comparing it with DNA in modern humans, scientists can begin to fill in some of the gaps of our species’ evolutionary history.

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Approximate Bayesian computation with deep learning supports a third arc...

Introgression of Neanderthals and Denisovans left genomic signals in anatomically modern human after Out-of-Afri...
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|

In this case, the results seem to match paleoanthropology theories that were developed from studying human ancestor fossils found in the ground. The new data suggest that the mysterious hominin was likely descended from an admixture of Neanderthals and Denisovans (who were only identified as a unique species on the human family tree in 2010). Such a species in our evolutionary past would look a lot like the fossil of a 90,000-year-old teenage girl from Siberia's Denisova cave. Her remains weredescribed last summer as the only known example of a first-generation hybrid between the two species, with a Neanderthal mother and a Denisovan father.

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Genetic history of an archaic hominin group from Denisova Cave in Siberia

Using DNA from a finger bone, the genome of an archaic hominin from southern Siberia has been sequenced to about...
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Ancient Girl’s Parents Were Two Different Human Species

Photograph by Robert Clark, National Geographic

Born 90,000 years ago, the child is the first direct evidence of interbreeding among Neanderthals and their cous...
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“It's exactly the kind of individual we expect to find at the origin of this population, however this should not be just a single individual but a whole population,” says study co-authorJaume Bertranpetit, an evolutionary biologist at Barcelona's Pompeu Fabra University.

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Evolutionary Systems Biology (UPF)

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image: https://thumbs-prod.si-cdn.com/u5W3aF5VxsMffA0rfs-x4LUomgY=/fit-in/1072x0/filters:focal(721x537:722x538)/https://public-media.si-cdn.com/filer/56/ba/56ba4950-fe4c-4987-b668-e13dc77da457/google_earth.jpg
The ability of early humans to adjust to changing conditions ultimately enabled the earliest species ofHomo to vary, survive and begin spreading from Africa to Eurasia 1.85 million years ago.(Image courtesy of Antón, Potts and Aiello (2014), Science 345(6192))
Previous human genome studies have revealed that after modern humans left Africa, perhaps180,000 years ago, they subsequently interbred with species like Neanderthals and Denisovans, who coexisted with early modern humans before going extinct. But redrawing our family tree to include these divergent branches has been difficult. Evidence for “ghost” species can be sparse, and many competing theories exist to explain when, where, and how oftenHomo sapiens might have interbred with other species.

Traces of these ancient interspecies liaisons, called introgressions, can be identified as places of divergence in the human genome. Scientists observe more separation between two chromosomes than you'd expect if both of the chromosomes came from the same human species. When scientists sequenced the Neanderthal genome in 2010, they realized that some of these divergences representedfractions of our genome that came from Neanderthals. Studies have also revealed that some living humans can traceas much as 5 percent of their ancestry to Denisovans.

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The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-...

Sankararaman et al. present a map of Denisovan and Neanderthal ancestry in 120 diverse populations and show that...
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Complete Neanderthal Genome Sequenced

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Neanderthals Went Extinct 30,000 Years Ago, But Their DNA Is Still in th...

Rachel Nuwer

Some of the Neanderthal genes made important contributions while others made us more susceptible to disease
|

|

|

“So, we thought we'd try to find these places of high divergence in the genome, see which are Neanderthal and which are Denisovan, and then see whether these explain the whole picture,” Bertranpetit says. “As it happens, if you subtract the Neanderthal and Denisovan parts, there is still something in the genome that is highly divergent.”

Identifying and analyzing the many divergent places throughout the genome, and computing the countless genetic combinations that could have produced them, is too big a job for humans to tackle on their own—but it's a task that may be tailor made for deep learning algorithms.

Deep learning is a type of artificial intelligence in which algorithms are designed to work as an artificial neural network, or a program that can process information the same way a mammalian brain would. These machine learning systems can detect patterns and account for previous information to “learn,” allowing them to perform new tasks or look for new information after analyzing enormous amounts of data. (A common example isGoogle DeepMind’s AlphaZero, which can teach itself to master board games.)

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Google's New AI Is a Master of Games, but How Does It Compare to the Hum...

Katherine J. Wu

After building AlphaGo to beat the world's best Go players, Google DeepMind built AlphaZero to take on the world...
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|

“Deep learning is fitting a more complicated shaped thing to a set of points in a bigger space,” saysJoshua Schraiber, an evolutionary genomics expert at Temple University. “Instead of fitting a line between Y and X, you're fitting some squiggly thing to a set of points in much bigger, thousand-dimensional space. Deep learning says, ‘I don't know what squiggly shape should fit to these points, but let's see what happens.’”

|
|
| |
Temple University PSM Bioinformatics :: Joshua Schraiber

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In this case, machines were set to work analyzing the human genome and predicting human demographics by simulating how our DNA might have evolved over many thousands of possible scenarios of ancient evolution. The program accounted for the structure and evolution of DNA as well as models of human migration and interbreeding to try to fit some of the pieces together in an incredibly complex puzzle.

The researchers trained the computer to analyze eight different models of the most plausible theories of early human evolution across Eurasia. The models came from previous studies that attempted to come up with a scenario that would result in the current picture of the human genome, including its known Neanderthal and Denisovan components.

“There could be other models, of course, but these models are the ones that other people have been proposing in the scientific literature,” Bertranpetit says. Each model begins with the accepted out-of-Africa event, then features a different set of the most likely splits between human lineages, including various interbreedings with both known species and possible “ghost” species.

image: https://thumbs-prod.si-cdn.com/t6fjc0wpKx1LD1nB_70tnuBX8FE=/fit-in/1072x0/https://public-media.si-cdn.com/filer/ac/36/ac36f68c-7591-410a-a241-24b07b513ae9/updated_ho_family_tree.jpg
Humans, or Homo sapiens, are descended from a complex tree of upright walking ancestors, including species from the generaArdipithecus, Australopithecus and Paranthropus. (Smithsonian's Human Origins Program)
“With each of these eight models, we calculate over weeks of computations how well they are able to reach the actual, present genetic composition of humans,” Bertranpetit says. “Every time we do a simulation, it's a simulation of a possible path of human evolution, and we have run those simulations thousands of times, and the deep learning algorithms are able to recognize which of the models best suit the data.”

The machine’s conclusion? An ancestor species is present in our lineage that we have yet to identify. “By far, the only models we tested that really are backed by the data are the ones having this ghost population introgression,” Bertranpetit says.

The intriguing study and others like it may help redraw the map of how humans migrated and evolved though what appears to be an increasingly complicated ancient world in Eurasia and Oceania.

“It’s certainly interesting and consistent with the emerging picture of a complex reticulated phylogeny in human evolution,”Iain Mathieson, a University of Pennsylvaniapopulation geneticist, says via email. “I’m not even sure it makes sense to talk about 'introgression events' when that seems to be the norm.” In fact, because only eight models were tested and many others could be possible, Mathieson adds that the new findings are “certainly a plausible scenario, but the reality is likely even more complex.”

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Mathieson Lab | Mathieson Lab | Perelman School of Medicine at the Unive...

Site Description Goes Here...
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As new fossil discoveries are made in the field, updated models can now be tested against the human genome using these types of programs. Schraiber says the power of deep learning for studying human origins lies precisely in its capability to analyze complex models.

“If you want to do an extremely detailed model because you're an anthropologist, and you want to know if this introgression happened 80,000 years ago or 40,000 years ago, that's the power of a deep learning approach like this.”

Complex as they are, the interbreedings of ancient Eurasia are still only one part of our human story. Bertranpetit believes that future advances in deep learning can help uncover other new chapters.

“This kind of method of analysis is going to have all kinds of new results,” he says. “I am sure that people working in Africa will find extinct groups that are not recognized yet. No doubt Africa is going to show us surprising things in the future.”

Read more: https://www.smithsonianmag.com/science-nature/artificial-intelligence-study-human-genome-finds-unknown-human-ancestor-species-180971436/#xmDh4vJTh2IZDcUJ.99
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Brenda , you are right , dolphins have a marked affinity for humans which is missing even in Chimps . For example , dolphins never attack humans and if somebody is drowning , they even try to save that person .

In contrast , chimps in the wild may react aggressively towards humans that intrude into their space .

The social behaviour of dolphins is much more similar to humans than that of chimps is to humans . Not just that , dolphin IQ has been found to be lot higher than chimps . The texture of human skin is also closer to that of an aquatic mammal such as the dolphin , rather than a land animal like chimpanzee .

There is definitely something of aquatic origin , also lurking in human DNA - it could either be of aquatic reptilians or dolphin type creatures .

**I just think it necessary to clarify that in my posts whenever I refer to reptilians , I mean the intelligent species of reptilians that live in subterranean/aquatic regions (descendents of dinosaurs) , NOT the ordinary terrestrial reptiles on Earth's surface , such as snakes , lizards , crocodiles etc.

deandddd wrote:

Brenda,

Amazing information, nice post.
Dean